PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 897690
Common NameARALYDRAFT_897690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 385aa    MW: 43047.5 Da    PI: 4.6564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
897690genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20129178255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+G+r+++ +g+W+AeIrdp++     r +lg+f+taeeAa+a++aa+++++g
  897690 129 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 178
             69*******.**********954...39************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.48E-17129187No hitNo description
Gene3DG3DSA:3.30.730.102.5E-32129187IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22129187IPR016177DNA-binding domain
SMARTSM003803.9E-39129192IPR001471AP2/ERF domain
PROSITE profilePS5103224.54129186IPR001471AP2/ERF domain
PRINTSPR003673.3E-11130141IPR001471AP2/ERF domain
PfamPF008471.0E-12130178IPR001471AP2/ERF domain
PRINTSPR003673.3E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGGAIISDF IPPPRSLRVT SEFIWPDLKN KGKKASKKRS NKRPDFFDLD DEFEADFRGF  60
KDDSAFDCED DFDDDVFVNV KPFVFTATTK PVASSVPVFA STVGSASAKK TVESDGQADT  120
SSKRKRKNQY RGIRQRPWGK WAAEIRDPRK GSREWLGTFD TAEEAARAYD AAARRIRGTK  180
AKVNFPEEKN ASVSQKRPTG KTNNLQKQVA KPNKSVTLVQ QPTHLSQQYC NNSFDNMGND  240
SFGDMSFMEE KPQMYNNQFG LTNSFDAEGN NGFQYFSSDQ GSNSFDCSEF GWRDHGPKTP  300
EISSMLVNNI QAPFVEETNA AKKLKPNSDD SDDLMAYLDN ALWDTPLEVE AMLGADAGAV  360
TQEEENPMDV WSLDEINFML EGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22129186260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0545390.0AY054539.1 Arabidopsis thaliana transcription factor EREBP-like protein (At3g14230; MLN21.1) mRNA, complete cds.
GenBankBT0003740.0BT000374.1 Arabidopsis thaliana transcription factor EREBP-like protein (At3g14230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885024.10.0hypothetical protein ARALYDRAFT_897690
SwissprotQ9LUM40.0RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLD7L2E20.0D7L2E2_ARALL; Putative uncharacterized protein
STRINGscaffold_301660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.20.0related to AP2 2